Package | Description |
---|---|
htsjdk.samtools.cram.build | |
htsjdk.samtools.cram.encoding.writer | |
htsjdk.samtools.cram.structure |
Modifier and Type | Method and Description |
---|---|
CompressionHeader |
CompressionHeaderFactory.build(List<CramCompressionRecord> records,
SubstitutionMatrix substitutionMatrix,
boolean sorted)
Decides on compression methods to use for the given records.
|
void |
CramNormalizer.normalize(ArrayList<CramCompressionRecord> records,
byte[] ref,
int refOffset_zeroBased,
SubstitutionMatrix substitutionMatrix) |
Modifier and Type | Field and Description |
---|---|
SubstitutionMatrix |
Writer.substitutionMatrix |
Modifier and Type | Field and Description |
---|---|
SubstitutionMatrix |
CompressionHeader.substitutionMatrix |