Package | Description |
---|---|
htsjdk.samtools.filter | |
htsjdk.variant.variantcontext.filter |
Modifier and Type | Class and Description |
---|---|
class |
JavascriptSamRecordFilter
javascript based read filter
The script puts the following variables in the script context:
- 'record' a SamRecord (
https://github.com/samtools/htsjdk/blob/master/src/java/htsjdk/samtools/
SAMRecord.java ) - 'header' (
https://github.com/samtools/htsjdk/blob/master/src/java/htsjdk/samtools/
SAMFileHeader.java )
|
Modifier and Type | Class and Description |
---|---|
class |
JavascriptVariantFilter
javascript based variant filter The script puts the following variables in
the script context:
- 'header' a htsjdk.variant.vcf.VCFHeader
- 'variant' a htsjdk.variant.variantcontext.VariantContext
|