Package | Description |
---|---|
htsjdk.samtools.cram.encoding | |
htsjdk.samtools.cram.encoding.reader | |
htsjdk.samtools.cram.io |
Modifier and Type | Method and Description |
---|---|
abstract T |
AbstractBitCodec.read(BitInputStream bitInputStream) |
T |
BitCodec.read(BitInputStream bitInputStream)
Read a single object from the bit stream.
|
byte[] |
ByteArrayStopEncoding.ByteArrayStopCodec.read(BitInputStream bitInputStream) |
abstract T |
AbstractBitCodec.read(BitInputStream bitInputStream,
int valueLen) |
T |
BitCodec.read(BitInputStream bitInputStream,
int valueLen)
Read a array of specified length from the bit stream.
|
byte[] |
ByteArrayStopEncoding.ByteArrayStopCodec.read(BitInputStream bitInputStream,
int length) |
void |
AbstractBitCodec.readInto(BitInputStream bitInputStream,
byte[] array,
int offset,
int valueLen) |
void |
BitCodec.readInto(BitInputStream bitInputStream,
byte[] array,
int offset,
int valueLen)
Read a array of specified length from the bit stream into a given byte array.
|
void |
AbstractBitCodec.skip(BitInputStream bitInputStream) |
void |
BitCodec.skip(BitInputStream bitInputStream)
Skip the next object in the bit stream.
|
void |
AbstractBitCodec.skip(BitInputStream bitInputStream,
int length) |
void |
BitCodec.skip(BitInputStream bitInputStream,
int length)
Skip the next length objects in the bit stream.
|
Modifier and Type | Method and Description |
---|---|
AbstractReader |
DataReaderFactory.buildReader(AbstractReader reader,
BitInputStream bitInputStream,
Map<Integer,InputStream> inputMap,
CompressionHeader header,
int refId) |
Modifier and Type | Class and Description |
---|---|
class |
DefaultBitInputStream
Must not read from delegate unless no bits left in the buffer!!!
|