Class and Description |
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AbstractFeatureCodec
Simple basic class providing much of the basic functionality of codecs
Every concrete subclass must implement
FeatureCodec.canDecode(String) to indicate whether it can decode the file. |
AbstractFeatureReader
jrobinso
the feature reader class, which uses indices and codecs to read in Tribble file formats.
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AbstractFeatureReader.ComponentMethods |
AsciiFeatureCodec
A convenience base class for codecs that want to read in features from ASCII lines.
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CloseableTribbleIterator
The basic iterator we use in Tribble, which allows closing and basic iteration.
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Feature
Represents a locus on a reference sequence.
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FeatureCodec
The base interface for classes that read in features.
|
FeatureCodecHeader
A class to represent a header of a feature containing file.
|
FeatureReader
the basic interface that feature sources need to match
|
TribbleException |
Class and Description |
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AbstractFeatureCodec
Simple basic class providing much of the basic functionality of codecs
Every concrete subclass must implement
FeatureCodec.canDecode(String) to indicate whether it can decode the file. |
AsciiFeatureCodec
A convenience base class for codecs that want to read in features from ASCII lines.
|
Feature
Represents a locus on a reference sequence.
|
FeatureCodec
The base interface for classes that read in features.
|
Class and Description |
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BinaryFeatureCodec
Implements common methods of
FeatureCodec s that read from PositionalBufferedStream s. |
Feature
Represents a locus on a reference sequence.
|
FeatureCodec
The base interface for classes that read in features.
|
FeatureCodecHeader
A class to represent a header of a feature containing file.
|
FeatureReader
the basic interface that feature sources need to match
|
Class and Description |
---|
AbstractFeatureCodec
Simple basic class providing much of the basic functionality of codecs
Every concrete subclass must implement
FeatureCodec.canDecode(String) to indicate whether it can decode the file. |
AsciiFeatureCodec
A convenience base class for codecs that want to read in features from ASCII lines.
|
Feature
Represents a locus on a reference sequence.
|
FeatureCodec
The base interface for classes that read in features.
|
Class and Description |
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Feature
Represents a locus on a reference sequence.
|
FeatureCodec
The base interface for classes that read in features.
|
Class and Description |
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Feature
Represents a locus on a reference sequence.
|
Class and Description |
---|
Feature
Represents a locus on a reference sequence.
|
Class and Description |
---|
Feature
Represents a locus on a reference sequence.
|
Class and Description |
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BinaryFeatureCodec
Implements common methods of
FeatureCodec s that read from PositionalBufferedStream s. |
Feature
Represents a locus on a reference sequence.
|
FeatureCodec
The base interface for classes that read in features.
|
FeatureCodecHeader
A class to represent a header of a feature containing file.
|
Class and Description |
---|
Feature
Represents a locus on a reference sequence.
|
Class and Description |
---|
AbstractFeatureCodec
Simple basic class providing much of the basic functionality of codecs
Every concrete subclass must implement
FeatureCodec.canDecode(String) to indicate whether it can decode the file. |
AsciiFeatureCodec
A convenience base class for codecs that want to read in features from ASCII lines.
|
Feature
Represents a locus on a reference sequence.
|
FeatureCodec
The base interface for classes that read in features.
|
NameAwareCodec
Created by IntelliJ IDEA.
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