public final class VCFConstants extends Object
Constructor and Description |
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VCFConstants() |
public static final Locale VCF_LOCALE
public static final String ANCESTRAL_ALLELE_KEY
public static final String ALLELE_COUNT_KEY
public static final String ALLELE_FREQUENCY_KEY
public static final String ALLELE_NUMBER_KEY
public static final String RMS_BASE_QUALITY_KEY
public static final String CIGAR_KEY
public static final String DBSNP_KEY
public static final String DEPTH_KEY
public static final String END_KEY
public static final String GENOTYPE_FILTER_KEY
public static final String GENOTYPE_KEY
public static final String GENOTYPE_POSTERIORS_KEY
public static final String GENOTYPE_QUALITY_KEY
public static final String GENOTYPE_ALLELE_DEPTHS
public static final String GENOTYPE_PL_KEY
public static final String EXPECTED_ALLELE_COUNT_KEY
@Deprecated public static final String GENOTYPE_LIKELIHOODS_KEY
public static final String HAPMAP2_KEY
public static final String HAPMAP3_KEY
public static final String HAPLOTYPE_QUALITY_KEY
public static final String RMS_MAPPING_QUALITY_KEY
public static final String MAPPING_QUALITY_ZERO_KEY
public static final String SAMPLE_NUMBER_KEY
public static final String PHASE_QUALITY_KEY
public static final String PHASE_SET_KEY
public static final String OLD_DEPTH_KEY
public static final String STRAND_BIAS_KEY
public static final String SOMATIC_KEY
public static final String VALIDATED_KEY
public static final String THOUSAND_GENOMES_KEY
public static final String FORMAT_FIELD_SEPARATOR
public static final String GENOTYPE_FIELD_SEPARATOR
public static final char GENOTYPE_FIELD_SEPARATOR_CHAR
public static final String FIELD_SEPARATOR
public static final char FIELD_SEPARATOR_CHAR
public static final String FILTER_CODE_SEPARATOR
public static final String INFO_FIELD_ARRAY_SEPARATOR
public static final char INFO_FIELD_ARRAY_SEPARATOR_CHAR
public static final String ID_FIELD_SEPARATOR
public static final String INFO_FIELD_SEPARATOR
public static final char INFO_FIELD_SEPARATOR_CHAR
public static final String UNPHASED
public static final String PHASED
public static final String PHASED_SWITCH_PROB_v3
public static final String PHASING_TOKENS
public static final String FILTER_HEADER_START
public static final String FORMAT_HEADER_START
public static final String INFO_HEADER_START
public static final String ALT_HEADER_START
public static final String CONTIG_HEADER_KEY
public static final String CONTIG_HEADER_START
public static final char DELETION_ALLELE_v3
public static final char INSERTION_ALLELE_v3
public static final char SPANNING_DELETION_ALLELE
public static final char NO_CALL_ALLELE
public static final char NULL_ALLELE
public static final String UNFILTERED
public static final String PASSES_FILTERS_v3
public static final String PASSES_FILTERS_v4
public static final String EMPTY_ID_FIELD
public static final String EMPTY_INFO_FIELD
public static final String EMPTY_ALTERNATE_ALLELE_FIELD
public static final String MISSING_VALUE_v4
public static final String MISSING_QUALITY_v3
public static final Double MISSING_QUALITY_v3_DOUBLE
public static final String MISSING_GENOTYPE_QUALITY_v3
public static final String MISSING_HAPLOTYPE_QUALITY_v3
public static final String MISSING_DEPTH_v3
public static final String UNBOUNDED_ENCODING_v4
public static final String UNBOUNDED_ENCODING_v3
public static final String PER_ALTERNATE_COUNT
public static final String PER_ALLELE_COUNT
public static final String PER_GENOTYPE_COUNT
public static final String EMPTY_ALLELE
public static final String EMPTY_GENOTYPE
public static final int MAX_GENOTYPE_QUAL
public static final Double VCF_ENCODING_EPSILON