Package | Description |
---|---|
htsjdk.samtools |
Modifier and Type | Class and Description |
---|---|
class |
SRAIndex
Emulates BAM index so that we can request chunks of records from SRAFileReader
Here is how it works:
SRA allows reading of alignments by Reference position fast, so we divide our "file" range for alignments as
a length of all references.
|
Modifier and Type | Method and Description |
---|---|
BrowseableBAMIndex |
SamReader.Indexing.getBrowseableIndex()
Gets an index tagged with the BrowseableBAMIndex interface.
|
BrowseableBAMIndex |
SamReader.PrimitiveSamReaderToSamReaderAdapter.getBrowseableIndex() |
BrowseableBAMIndex |
SAMFileReader.getBrowseableIndex()
Deprecated.
Gets an index tagged with the BrowseableBAMIndex interface.
|
BrowseableBAMIndex |
SRAFileReader.getBrowseableIndex()
Gets an index tagged with the BrowseableBAMIndex interface.
|
BrowseableBAMIndex |
CRAMFileReader.getBrowseableIndex() |