Package | Description |
---|---|
htsjdk.tribble.index | |
htsjdk.tribble.index.tabix |
Modifier and Type | Method and Description |
---|---|
static <FEATURE_TYPE extends Feature,SOURCE_TYPE> |
IndexFactory.createTabixIndex(File inputFile,
FeatureCodec<FEATURE_TYPE,SOURCE_TYPE> codec,
TabixFormat tabixFormat,
SAMSequenceDictionary sequenceDictionary) |
Modifier and Type | Field and Description |
---|---|
static TabixFormat |
TabixFormat.BED |
static TabixFormat |
TabixFormat.GFF
Predefined headers for known formats
|
static TabixFormat |
TabixFormat.PSLTBL |
static TabixFormat |
TabixFormat.SAM |
static TabixFormat |
TabixFormat.VCF |
Modifier and Type | Method and Description |
---|---|
TabixFormat |
TabixFormat.clone() |
TabixFormat |
TabixIndex.getFormatSpec() |
Constructor and Description |
---|
TabixIndex(TabixFormat formatSpec,
List<String> sequenceNames,
BinningIndexContent[] indices) |
TabixIndexCreator(SAMSequenceDictionary sequenceDictionary,
TabixFormat formatSpec) |
TabixIndexCreator(TabixFormat formatSpec) |