Package | Description |
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htsjdk.samtools |
Modifier and Type | Class and Description |
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class |
DefaultSAMRecordFactory
Default factory for creating SAM and BAM records used by the SAMFileReader classes.
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Modifier and Type | Method and Description |
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abstract SamReaderFactory |
SamReaderFactory.samRecordFactory(SAMRecordFactory samRecordFactory)
Set this factory's
SAMRecordFactory to the provided one, then returns itself. |
void |
SAMFileReader.setSAMRecordFactory(SAMRecordFactory factory)
Deprecated.
Override the default SAMRecordFactory class used to instantiate instances of SAMRecord and BAMRecord.
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Constructor and Description |
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BAMRecordCodec(SAMFileHeader header,
SAMRecordFactory factory) |
SAMLineParser(SAMRecordFactory samRecordFactory,
ValidationStringency validationStringency,
SAMFileHeader samFileHeader,
SamReader samFileReader,
File samFile)
Public constructor.
|