Package | Description |
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htsjdk.samtools |
Modifier and Type | Method and Description |
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static DownsamplingIteratorFactory.Strategy |
DownsamplingIteratorFactory.Strategy.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static DownsamplingIteratorFactory.Strategy[] |
DownsamplingIteratorFactory.Strategy.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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static DownsamplingIterator |
DownsamplingIteratorFactory.make(File samFile,
DownsamplingIteratorFactory.Strategy strategy,
double proportion,
double accuracy,
int seed)
Convenience method that constructs a downsampling iterator for all the reads in a SAM file.
|
static DownsamplingIterator |
DownsamplingIteratorFactory.make(Iterator<SAMRecord> iterator,
DownsamplingIteratorFactory.Strategy strategy,
double proportion,
double accuracy,
int seed)
Creates a new DownsamplingIterator using the supplied Strategy that attempts to read from the provided iterator and return
approximately proportion of the records read.
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static DownsamplingIterator |
DownsamplingIteratorFactory.make(SamReader reader,
DownsamplingIteratorFactory.Strategy strategy,
double proportion,
double accuracy,
int seed)
Convenience method that constructs a downsampling iterator for all the reads available from a SamReader.
|