Package | Description |
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htsjdk.tribble.index |
Modifier and Type | Method and Description |
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static IndexFactory.IndexType |
IndexFactory.IndexType.getIndexType(BufferedInputStream is) |
static IndexFactory.IndexType |
IndexFactory.IndexType.valueOf(String name)
Returns the enum constant of this type with the specified name.
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static IndexFactory.IndexType[] |
IndexFactory.IndexType.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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Modifier and Type | Method and Description |
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static <FEATURE_TYPE extends Feature,SOURCE_TYPE> |
IndexFactory.createIndex(File inputFile,
FeatureCodec<FEATURE_TYPE,SOURCE_TYPE> codec,
IndexFactory.IndexType type)
Create a index of the specified type with default binning parameters
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Modifier and Type | Method and Description |
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protected static LinkedHashMap<Double,TribbleIndexCreator> |
DynamicIndexCreator.scoreIndexes(double densityOfFeatures,
Map<IndexFactory.IndexType,TribbleIndexCreator> indexes,
int longestFeature,
IndexFactory.IndexBalanceApproach iba)
score the available indexes for the specified density and feature lengths
The scoring method is trying to determine how many features would be returned for a sample one base query; or:
(features/seek).
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