Package | Description |
---|---|
htsjdk.variant.vcf |
Modifier and Type | Field and Description |
---|---|
protected VCFHeaderVersion |
AbstractVCFCodec.version |
Modifier and Type | Method and Description |
---|---|
static VCFHeaderVersion |
VCFHeaderVersion.getHeaderVersion(String versionLine) |
static VCFHeaderVersion |
VCFHeaderVersion.toHeaderVersion(String version)
get the header version
|
static VCFHeaderVersion |
VCFHeaderVersion.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static VCFHeaderVersion[] |
VCFHeaderVersion.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
boolean |
VCFHeaderVersion.isAtLeastAsRecentAs(VCFHeaderVersion target)
Determines whether this version is at least as recent as a given version
|
protected VCFHeader |
AbstractVCFCodec.parseHeaderFromLines(List<String> headerStrings,
VCFHeaderVersion version)
create a VCF header from a set of header record lines
|
static Map<String,String> |
VCFHeaderLineTranslator.parseLine(VCFHeaderVersion version,
String valueLine,
List<String> expectedTagOrder) |
VCFHeader |
AbstractVCFCodec.setVCFHeader(VCFHeader header,
VCFHeaderVersion version)
Explicitly set the VCFHeader on this codec.
|
Constructor and Description |
---|
VCFCompoundHeaderLine(String line,
VCFHeaderVersion version,
VCFCompoundHeaderLine.SupportedHeaderLineType lineType)
create a VCF format header line
|
VCFContigHeaderLine(String line,
VCFHeaderVersion version,
String key,
int contigIndex)
create a VCF contig header line
|
VCFFilterHeaderLine(String line,
VCFHeaderVersion version)
create a VCF info header line
|
VCFFormatHeaderLine(String line,
VCFHeaderVersion version) |
VCFInfoHeaderLine(String line,
VCFHeaderVersion version) |
VCFSimpleHeaderLine(String line,
VCFHeaderVersion version,
String key,
List<String> expectedTagOrdering)
create a VCF info header line
|