Package | Description |
---|---|
htsjdk.samtools |
Modifier and Type | Field and Description |
---|---|
static CigarOperator |
CigarOperator.DELETION |
static CigarOperator |
CigarOperator.HARD_CLIP |
static CigarOperator |
CigarOperator.INSERTION |
static CigarOperator |
CigarOperator.MATCH_OR_MISMATCH |
static CigarOperator |
CigarOperator.PADDING |
static CigarOperator |
CigarOperator.SKIPPED_REGION |
static CigarOperator |
CigarOperator.SOFT_CLIP |
Modifier and Type | Method and Description |
---|---|
static CigarOperator |
CigarOperator.binaryToEnum(int i) |
static CigarOperator |
CigarOperator.characterToEnum(int b) |
CigarOperator |
CigarElement.getOperator() |
static CigarOperator |
CigarOperator.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static CigarOperator[] |
CigarOperator.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
boolean |
Cigar.containsOperator(CigarOperator operator)
returns true if the cigar string contains the given operator
|
static int |
CigarOperator.enumToBinary(CigarOperator e) |
static byte |
CigarOperator.enumToCharacter(CigarOperator e)
Returns the character that should be used within a SAM file.
|
Modifier and Type | Method and Description |
---|---|
static Cigar |
Cigar.fromCigarOperators(List<CigarOperator> cigarOperators)
build a new Cigar object from a list of cigar operators.
|
Constructor and Description |
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CigarElement(int length,
CigarOperator operator) |