Package | Description |
---|---|
htsjdk.samtools | |
htsjdk.samtools.util | |
htsjdk.variant.vcf |
Modifier and Type | Class and Description |
---|---|
class |
BAMRecordCodec
Class for translating between in-memory and disk representation of BAMRecord.
|
Modifier and Type | Method and Description |
---|---|
SortingCollection.Codec<T> |
SortingCollection.Codec.clone()
Must return a cloned copy of the codec that can be used independently of
the original instance.
|
Modifier and Type | Method and Description |
---|---|
static <T> SortingCollection<T> |
SortingCollection.newInstance(Class<T> componentType,
SortingCollection.Codec<T> codec,
Comparator<T> comparator,
int maxRecordsInRAM)
Syntactic sugar around the ctor, to save some typing of type parameters.
|
static <T> SortingCollection<T> |
SortingCollection.newInstance(Class<T> componentType,
SortingCollection.Codec<T> codec,
Comparator<T> comparator,
int maxRecordsInRAM,
Collection<File> tmpDirs)
Syntactic sugar around the ctor, to save some typing of type parameters
|
static <T> SortingCollection<T> |
SortingCollection.newInstance(Class<T> componentType,
SortingCollection.Codec<T> codec,
Comparator<T> comparator,
int maxRecordsInRAM,
File... tmpDir)
Syntactic sugar around the ctor, to save some typing of type parameters
|
static <T> DiskBackedQueue<T> |
DiskBackedQueue.newInstance(SortingCollection.Codec<T> codec,
int maxRecordsInRam,
List<File> tmpDir)
Syntactic sugar around the ctor, to save some typing of type parameters
|
Modifier and Type | Class and Description |
---|---|
class |
VCFRecordCodec
Writes VariantContext instances to an OutputStream without headers or metadata.
|