Package | Description |
---|---|
pal.alignment |
Classes dealing with sequence alignments, including methods for reading
and printing in several possible formats, as well as rearranging and
concatenating.
|
Modifier and Type | Class and Description |
---|---|
class |
MultiLocusAnnotatedAlignment
MultiLocusAnnotatedAlignment is an extension of the SimpleAlignment that includes Annotation, and is designed for multiple
loci.
|
class |
SimpleAnnotatedAlignment
This is the basic implementation of the Annotation interface, which is designed to
provide annotation for an alignment.
|